required
type: string
type: boolean
type: integer
type: string
type: string
default: ./results
type: string
pattern: ^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$

type: string
type: string
type: string
type: string
type: string
type: string
type: string
type: string
type: string
type: boolean
hidden
type: string
default: s3://ngi-igenomes/igenomes/
hidden
type: boolean

type: integer
type: integer
type: integer
type: integer
type: integer
type: boolean
type: boolean

type: boolean
type: boolean
type: boolean
type: integer
type: boolean
type: boolean
hidden
type: string
default: $baseDir/assets/bamtools_filter_pe.json
hidden
type: string
default: $baseDir/assets/bamtools_filter_se.json

type: boolean
type: number
default: 0.1
type: number
type: number
type: integer
default: 1
type: boolean
type: boolean

type: boolean
type: boolean

type: boolean
type: boolean
type: boolean
type: boolean
type: boolean
type: boolean
type: boolean

hidden
type: string
default: master
hidden
type: string
default: https://raw.githubusercontent.com/nf-core/configs/master
hidden
type: string
hidden
type: string
hidden
type: string
hidden
type: string

hidden
type: integer
default: 16
hidden
type: string
default: 128.GB
hidden
type: string
default: 240.h

hidden
type: boolean
hidden
type: integer
default: 500000
hidden
type: string
hidden
type: string
hidden
type: string
pattern: ^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$
hidden
type: boolean
hidden
type: string
default: 25.MB
hidden
type: boolean
hidden
type: string
hidden
type: string
default: ${params.outdir}/pipeline_info
hidden
type: string