GA4GH TES Configuration
To be used with the tes profile by specifying the -profile tes when running nf-core pipelines.
Custom endpoints and authentication need to be supplied with params.endpoint, params.basicUsername, params.basicPassword.
Additionally you will need to add the -plugin nf-ga4gh at command line to import the correct plugin.
Required Parameters
--endpoint
URL of TES endpoint.
--basicUsername
Username for authentication for TES endpoint.
--basicPassword
Password for authentication for TES endpoint.
Config file
//Nextflow config file for running on TES Backend
process {
executor = "tes"
}
params {
config_profile_description = 'GA4GH TES Profile'
config_profile_contact = 'Venkat Malladi (@vsmalladi)'
config_profile_url = 'https://github.com/ga4gh/task-execution-schemas'
// TES
endpoint = null
basicUsername = null
basicPassword = null
}
tes {
endpoint = params.endpoint
basicUsername = params.basicUsername
basicPassword = params.basicPassword
}
executor
tes
contact
